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Add support of Structural variants #36

Merged
merged 5 commits into from
Apr 14, 2024
Merged

Add support of Structural variants #36

merged 5 commits into from
Apr 14, 2024

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gromdimon
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@gromdimon gromdimon self-assigned this Apr 14, 2024
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codecov bot commented Apr 14, 2024

Codecov Report

Attention: Patch coverage is 78.19549% with 29 lines in your changes are missing coverage. Please review.

Project coverage is 84.18%. Comparing base (933933e) to head (08e6e58).

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #36      +/-   ##
==========================================
+ Coverage   83.47%   84.18%   +0.70%     
==========================================
  Files          14       16       +2     
  Lines         962     1081     +119     
==========================================
+ Hits          803      910     +107     
- Misses        159      171      +12     
Files Coverage Δ
src/cli.py 95.23% <100.00%> (+0.23%) ⬆️
src/defs/autopvs1.py 100.00% <100.00%> (ø)
src/defs/seqvar.py 93.10% <100.00%> (+15.19%) ⬆️
src/seqvar_pvs1.py 57.87% <ø> (ø)
src/defs/strucvar.py 96.49% <96.49%> (ø)
src/strucvar_pvs1.py 43.47% <43.47%> (ø)
src/autoPVS1.py 67.18% <57.57%> (-6.63%) ⬇️

@gromdimon gromdimon merged commit 834e329 into main Apr 14, 2024
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@gromdimon gromdimon deleted the strucvars branch April 15, 2024 08:35
gromdimon added a commit that referenced this pull request Aug 2, 2024
* implement strucvar def

* create skeleton of strucvar_pvs1 file

* remove ds_store and clenup makefile

* tests for strucvar

* add autoPVS1 tests
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Add support of structural variants
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